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This is the home of the SLASH project. SLASH stands for "Scalable system for Large data Analysis and Segmentation utilizing a Hybrid approach" (yes it's a mouthful) and represents the name of a 3 year grant we submitted in Oct 2010, and were awarded May 2011. This is a joint grant shared between the The National Center for Microscopy and Imaging Research (NCMIR) at the University of California, San Diego (UCSD) and The Scientific Computing and Imaging Institute (SCI) at the University of Utah. The aim of the grant is to: "to couple novel automatic algorithms with highly scalable tools for collaboratively refining segmentations" with SCI heading the charge for the development of novel automated algorithms, and NCMIR performing data collection and work on collaborative segmentation system. SLASH is a project spawned from the "NeuroSeg" group, and we still use a "neuroseg" e-mail list (neuralseg@sci.utah.edu), so it's easy to get the two terms confused. To learn more about this grant contact Rick Giuly.

Meetings:

• In accordance with the grant, meetings are held bi-weekly - typically every second Wednesday at 2:30 in the NCMIR conference room, teleconference to Utah.
• Meeting Minutes - here we try and maintain minutes from any important meetings.

SLASH Module List:

• WIB Client
• WBC Mobile Client
• CellSculpt Client
• WIB Image Server
• Collaborative Management Middleware
• Resource Manager
• CCDB

Design Documents:

• SLASH wiki pages:
  • SLASH - Architecture - explains how components of SLASH fit together.
  • SLASH - Use Cases - includes original use cases from grant, and more should be added.
  • SLASH - Development and Design Milestones -
• PDF documents:
  • Segmentation System Diagram and Requirements (pdf) - Rick's diagram showing how part interact
  • Segmentation System Module Diagram - 
• Module documentation:
  • CellSculpt - Architecture - includes concept diagram and shows how CellSculpt interfaces with the CCDB.
  • CellSculpt - Backend - shows how CellSculpt interfaces with slash tables in CCDB. See also: "Frontend" for class diagrams.
  • WIB Image Manager - Steve Lamont's server used by WIB and CellSculpt to deliver image tiles.
  • WBC Mobile Technical Details - Rich Stoner's project allowing viewing and tracing data on iPhone and iPad.

Other

• Automatic Segmentation in WIB

Recently Updated

• Running matplotlib on Megashark

  Aug 11, 2015 • updated by Larry Lui • view change
• Home

  Jun 02, 2015 • updated by Chris Churas • view change
• Home

  Mar 09, 2015 • updated by Willy Wong • view change
• CCDB CHM Trained Model REST Service Checkout Build and Deploy

  Feb 11, 2015 • updated by Chris Churas • view change
• Installing Kepler 2.4

  Oct 01, 2014 • created by Chris Churas
• CCDB Web Services

  Jun 06, 2014 • updated by Willy Wong • view change
• Nervetrace

  Sep 25, 2012 • updated by Richard Giuly • view change
• Home

  Sep 28, 2011 • updated by Richard Giuly • view change
• Home

  Sep 19, 2011 • updated by Andrew Noske • view change
• example public dataset

  Jun 23, 2011 • updated by Sean Penticoff • view change
• Nervetrace

  Jun 23, 2011 • updated by Willy Wong • view change
• Nervetrace

  Jun 23, 2011 • updated by Sean Penticoff • view change
• Home

  Jun 08, 2011 • updated by vadim astakhov • view change
• Home

  Jun 01, 2011 • updated by David Lee • view change
• segmentation_diagram_and_requirements.pdf

  May 19, 2011 • attached by Richard Giuly

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