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Personal Notes regarding TxBR

TxBR 3.0 Command Lines

• Wiki Markupruntxbr.py \ [-h\]
  Will run txbr with a single command from alignment all the way to backprojection.  The \  The -h flag brings up a listing of other useable flags to modify the job protocol.    Use in the data directory.  
• qsub runtxbr.bash.pbs
  Use on a cluster to submit the .pbs job file.  Modify the .pbs file as necessary.

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